Man pages for khufkens/phenor
An R phenology modelling framework

AGSIAccumulated growing season index model (1) as defined by Xin...
AICcCalculates AICc values for a set of measured and predicted...
arrow_plotGenerates an arrow plot, plotting differences between two...
ATAlternating model as defined in Basler et al. 2016 (Agr. For....
CDDChilling Degree Day (CDD) adapted from Jeong & Medvigny 2014...
check_npn_phenophasesChecks if USA-NPN phenophase exists
check_npn_speciesChecks if USA-NPN species exists
check_pep725_speciesChecks if PEP725 species name or number exists or can be...
daylengthCalculates day length (in hours) and the solar elevation...
download_berkeley_earthDownload Berkeley Earth Gridded mean daily temperature data
download_cmip5Download NASA Earth Exchange Global Daily Downscaled...
download_npnAutomatically download USA-NPN data using the API interface
download_pep725Automatically download PEP725 data
estimate_phenologyCalculates the estimated phenophases for a given set of...
flat_formatRequest a flat format file from those as generated by...
format_berkeley_earthPreprocessing of Berkeley Earth Gridded temperature data
format_cmip5Preprocessing of NASA Earth Exchange Global Daily Downscaled...
format_daymet_tilesPreprocessing of Daymet tiled data into a format which can be...
format_eobsPreprocessing E-OBS data as hosted by: http://www.ecad.eu/
format_modisPreprocessing of all PhenoCam data into a format which can be...
format_npnPreprocessing of USA-NPN data into a format which can be...
format_pep725Preprocessing of PEP725 data into a format which can be...
format_phenocamPreprocessing of all PhenoCam data into a format which can be...
GRPThermal Time grassland pollen model which includes a pulse...
igbp_1igbp_1
igbp_10igbp_10
igbp_4igbp_4
igbp_5igbp_5
land_cover_densityCalculates land cover density values based upon a MODIS...
LINLinear model as defined in Basler et al. 2016 (Agr. For....
M1M1 model as defined in Basler et al. 2016 (Agr. For....
M1sM1 model as defined in Basler et al. 2016 (Agr. For....
merge_pep725Preprocessing of PEP725 data, merges separate files into tidy...
model_calibrationModel validation routine to faciliate model development and...
model_comparisonModel comparison routine to faciliate model development and...
nullNull model as defined in Basler et al. 2016 (Agr. For....
optimize_parametersCalculates the estimated phenophases for a given set of...
PAParallel model as defined in Basler et al. 2016 (Agr. For....
PAbParallel model as defined in Basler et al. 2016 (Agr. For....
phenocam_DBphenocam_DB
phenocam_DB_autumnphenocam_DB_autumn
phenocam_ENphenocam_EN
phenocam_GRphenocam_GR
phenorphenor: A package for rapid phenology model development.
plot_model_comparisonModel comparison plotting routine to faciliate model...
PM1Parallel M1 model as defined in Basler et al. 2016 (Agr. For....
PM1bParallel M1 model as defined in Basler et al. 2016 (Agr. For....
PTTPhotothermal Time model as defined in Basler et al. 2016...
PTTsPhotothermal Time model as defined in Basler et al. 2016...
rmseCalculates the Root Mean Squared Error (RMSE) as a cost...
SGSIStandard growing season index model as defined by Xin et al....
shape_model_output(re)shape model output based upon the class of the input data...
SM1Sequential model (M1 variant) as defined in Basler et al....
SM1bSequential model (M1 variant) as defined in Basler et al....
SQSequential model as defined in Basler et al. 2016 (Agr. For....
SQbSequential model as defined in Basler et al. 2016 (Agr. For....
triangular_temperature_responseTriangular temperature response function as defined in Basler...
TTThermal Time model as defined in Basler et al. 2016 (Agr....
TTsThermal Time model as defined in Basler et al. 2016 (Agr....
UM1Unified M1 model as defined in Basler et al. 2016 (Agr. For....
UNUnified model as defined in Basler et al. 2016 (Agr. For....
khufkens/phenor documentation built on Nov. 22, 2017, 10:02 a.m.