batch_rates_and_fractions: Calculate rates and fraction of an input list of values.

In ki-tools/champs-mortality: Calculate mortality fractions and rates for CHAMPS sites

Calculate rates and fraction of an input list of values.

Description

Allows user to provide an input table in CSV format to iteratively calculate results using get_rates_and_fractions() with the output returned in one row per set of inputs.

Usage

batch_rates_and_fractions(dat, inputs)

Arguments

dat

Processed CHAMPS dataset.

inputs

Path to a csv file specifying each scenario to run with columns 'site','catchment', 'age', 'condition', 'icd10_regex', 'causal_chain'. The columns 'age', 'condition' ,'site', and 'catchment' can have multiple values separated by a semicolon. These variables specify parameters that will be passed to get_rates_and_fractions() Alternately, this can be a list of named lists of parameters with the same names of the csv file. See examples below.

ki-tools/champs-mortality documentation built on Oct. 9, 2022, 6:32 a.m.