summary.mfa: Summarise an mfa fit

In kieranrcampbell/mfa: Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations

Summarise an mfa fit

Description

Returns summary statistics of an mfa fit, including MAP pseudotime and branch allocations along with uncertainties.

Usage

## S3 method for class 'mfa'
summary(object, ...)

Arguments

object	An MFA fit returned by a call to mfa
...	Additional arguments

Value

A data_frame with the following columns:

• pseudotime The MAP pseudotime estimate

• branch The MAP branch estimate

• branch_certainty The proportion of traces for which the cell is assigned to its MAP branch

• pseudotime_lower The lower bound on the 95 (HPD) credible interval

• pseudotime_upper The upper bound on the 95

Examples

synth <- create_synthetic(C = 20, G = 5)
m <- mfa(synth$X)
ms <- summary(m)

kieranrcampbell/mfa documentation built on March 27, 2022, 5:20 a.m.