Man pages for kieranrcampbell/ouija
Interpretable marker-based single-cell pseudotime using Bayesian parametric models
| cluster_consistency | Cluster the consistency matrix |
| consistency | Create, order, and plot a consistency matrix |
| example_gex | Example gene expression matrix |
| genereg | Differences in regulation timing |
| map | Extract the MAP estimates from a 'ouija_fit' |
| oui | Precomputed Ouija fit |
| ouija | Fit descriptive single-cell pseudotime using Ouija |
| plot_diagnostics | Plot MCMC diagnostics. |
| plotexprs | Plot fitted expression, switch times, and peak times |
| predexprs | Predicted expression (mean and sampling) |
| print.ouija_fit | Print a 'ouija_fit' |
| pseudotime_error | Pseudotime errors |
| regulation_df | Get regulation df |
| transient | Generic function to model transient expression whenever... |
| tsigmoid | Generic function to return sigmoid whenever needed |
