cellMarkerPlots: Creates Feature Plots based on average gene expression of a...

In kimberle9/rfca: Random Forest Cell Annotation of single-cell transcriptomics data

Description

Creates Feature Plots based on average gene expression of a list of genes

Usage

cellMarkerPlots(
  seuratObj,
  geneList = gsl,
  pt.size = 0.3,
  label = FALSE,
  label.size = 3,
  repel = FALSE,
  combine = TRUE
)

Arguments

seuratObj	Seurat Object
geneList	A list of lists containing gene names
pt.size	Size of each point/cell on the UMAP plot. Default is 0.3
label	Whether to have Ident labels on the UMAP plot. Default is FALSE.
label.size	Size of Indent labels on UMAP plot. Default is 3.
repel	Whether to repel Indent labels on UMAP plot. Default is FALSE.
combine	Whether to stitch/combine all the UMAP plots into 1 ggplot object. Default is TRUE.

Value

Feature plot with gene set scores

Author(s)

Kimberle Shen

kimberle9/rfca documentation built on Oct. 8, 2020, 5:44 a.m.