inst/extdata/height.R
In kindlychung/collr2: QCDH
require(collr)
setwd("/media/data1/kaiyin/RS123_1KG")
plinkParamList = getPlinkParam(
allow_no_sex = "",
missing_phenotype = 9999,
pheno = "RS123.1kg.pheno/height.csv",
covar = "RS123.1kg.pheno/height.csv",
covar_name = "SEX,AGE",
linear = "hide-covar",
pheno_name = "HEIGHT"
)
initPlinkArgs = getPlinkParam(maf = 0.01, hwe = 1e-4, geno=0.02)
taskRoutine( taskname="Height_s200", plinkParamList=plinkParamList, initPlinkArgs = initPlinkArgs, nMaxShift=200, pvalThresh=1e-3 )
kindlychung/collr2 documentation built on May 20, 2019, 9:57 a.m.
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require(collr)
setwd("/media/data1/kaiyin/RS123_1KG")
plinkParamList = getPlinkParam(
allow_no_sex = "",
missing_phenotype = 9999,
pheno = "RS123.1kg.pheno/height.csv",
covar = "RS123.1kg.pheno/height.csv",
covar_name = "SEX,AGE",
linear = "hide-covar",
pheno_name = "HEIGHT"
)
initPlinkArgs = getPlinkParam(maf = 0.01, hwe = 1e-4, geno=0.02)
taskRoutine( taskname="Height_s200", plinkParamList=plinkParamList, initPlinkArgs = initPlinkArgs, nMaxShift=200, pvalThresh=1e-3 )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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