README.md

In kindlychung/manqq: Manhattan and QQ plot

Requirements

• git
• R packages:
  • ggplot2
  • Rcpp
  • RcppArmadillo
  • devtools

Installation

require(devtools)
Sys.setenv("PKG_CXXFLAGS"="-std=c++11")
install_github("manqq", username="kindlychung")

Changes

• fixed breaks-labels
• fixed an out-of-index bug in readcols
• readcols now switched to Rcpp::CharacterMatrix
• added pval filter
• no longer store CHR, SNP, BP as vectors, they are in a data frame
• reading of plink output file now handled by c++ functions

To do

• test initializer using vectors
• replace message with warning?

kindlychung/manqq documentation built on May 20, 2019, 10:01 a.m.