cov1.2012Fisher: One-sample Test for Covariance Matrix by Fisher (2012)

In kisungyou/SHT: Statistical Hypothesis Testing Toolbox

One-sample Test for Covariance Matrix by Fisher (2012)

Description

Given a multivariate sample X and hypothesized covariance matrix Σ_0, it tests

H_0 : Σ_x = Σ_0\quad vs\quad H_1 : Σ_x \neq Σ_0

using the procedure by Fisher (2012). This method utilizes the generalized form of the inequality

\frac{1}{p} ∑_{i=1}^p (λ_i^r - 1)^{2s} ≥ 0

and offers two types of test statistics T_1 and T_2 corresponding to the case (r,s)=(1,2) and (2,1) respectively.

Usage

cov1.2012Fisher(X, Sigma0 = diag(ncol(X)), type)

Arguments

X	an (n\times p) data matrix where each row is an observation.
Sigma0	a (p\times p) given covariance matrix.
type	1 or 2 for corresponding statistic from the paper.

Value

a (list) object of S3 class htest containing:

statistic

a test statistic.

p.value

p-value under H_0.

alternative

alternative hypothesis.

method

name of the test.

data.name

name(s) of provided sample data.

References

\insertRef

fisher_testing_2012SHT

Examples

## CRAN-purpose small example
smallX = matrix(rnorm(10*3),ncol=3)
cov1.2012Fisher(smallX) # run the test


## empirical Type 1 error 
niter   = 1000
counter1 = rep(0,niter)  # p-values of the type 1
counter2 = rep(0,niter)  # p-values of the type 2
for (i in 1:niter){
  X = matrix(rnorm(50*5), ncol=50) # (n,p) = (5,50)
  counter1[i] = ifelse(cov1.2012Fisher(X, type=1)$p.value < 0.05, 1, 0)
  counter2[i] = ifelse(cov1.2012Fisher(X, type=2)$p.value < 0.05, 1, 0)
}

## print the result
cat(paste("\n* Example for 'cov1.2012Fisher' \n","*\n",
"* empirical error with statistic 1 : ", round(sum(counter1/niter),5),"\n",
"* empirical error with statistic 2 : ", round(sum(counter2/niter),5),"\n",sep=""))

kisungyou/SHT documentation built on Oct. 15, 2022, 3:18 p.m.