append_Primo_obj | Append a Primo object. |
calc_Dmatrix | Density matrix calculation |
calc_fdr | Calculate the empirical false discovery rate (FDR). |
calc_fdr_col | Calculate the empirical false discovery rate (FDR) for a... |
calc_fdr_conditional | Calculate the empirical false discovery rate (FDR) after... |
calc_fdr_multi | Calculate the empirical false discovery rate (FDR) for each... |
chiMix_pDiff | Difference from nominal P-values of a chi-squared mixture. |
collapse_pp_combin | Collapse posterior probabilities of association for... |
collapse_pp_num | Collapse posterior probabilities based on number of traits of... |
collapse_pp_trait | Collapse posterior probabilities of association for each... |
em_iter | EM Iteration |
e_step | E-step |
e_step_withColSums | E-step, with column sums of posterior probabilities |
estimate_densities | Estimate parameters under the null and alternative densities |
estimate_densities_modT | Estimate parameters under the null and alternative densities |
estimate_densities_pval | Estimate parameters under the alternative density |
find_leadsnps | Find the lead SNP for each phenotype in each region. |
make_qmat | Create association pattern matrix |
m_step | M-step |
Primo | Estimate posterior probabilities of association patterns. |
Primo_chiMix | Estimate posterior probabilities of association patterns,... |
Primo_conditional | Perform conditional analysis for a specified variant. |
Primo_missdata_pval | Estimate posterior probabilities for observations missing... |
Primo_missdata_tstat | Estimate posterior probabilities for observations missing... |
Primo_modT | Estimate posterior probabilities of association patterns,... |
primo-package | Primo: Package in R for Integrative Multi-Omics association... |
Primo_pval | Estimate posterior probabilities of association patterns,... |
Primo_tstat | Estimate posterior probabilities of association patterns,... |
run_conditional | Set up conditional analysis for specified variant(s) by... |
run_conditional_gwas | Conditional analysis for known complex trait-associated... |
subset_Primo_obj | Subset a Primo object. |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.