Man pages for kkolmus/MolecularAnalyzeR
This package aims at checking correlation between gene expression and copy number variation for cohorts of patients analyzed within The Cancer Genome Atlas project
| annotateGenes | This function annotate ENSEMBLE gene IDs into HGNC symbol... |
| downloadCNVdata | This function downloads, pre-processes and filters harmonized... |
| downloadExpData | This function downloads, pre-processes and filters harmonized... |
| empty_plot | Helper function for visGenotypeComparison. |
| inputSLanalyzeR | Expression data |
| listTCGAcohorts | This function prints available cohorts within The Cancer... |
| matchData | Helper function for runGenotypeComparison. |
| normalizeExpData | This function performs normalization of expression data. |
| prepareData | This function extracts relevant data for a pair of genes to... |
| runGenotypeComparison | This function runs statistical analysis (wilcoxon test) which... |
| visGenotypeComparison | This function runs statistical analysis (wilcoxon test) which... |
