findGuideHitsAllScreens: Calculate guide-level stats for multiple experiments

In klarman-cell-observatory/MAUDE: Mean Alterations Using Discrete Expression

Description

Uses findGuideHits to find guide-level stats for each unique entry in 'experiments'.

Usage

findGuideHitsAllScreens(experiments, countDataFrame, binStats, ...)

Arguments

experiments	a data.frame containing the headers that demarcate the screen ID, which are all also present in countDataFrame and binStats
countDataFrame	a table containing one column for each bin (A-F) and another column for non-targeting guide (logical-"NT"), and unsorted abundance (NS), as well as columns corresponding to those in 'experiments'
binStats	a bin model as created by makeBinModel, as well as columns corresponding to those in 'experiments'
...	other parameters for findGuideHits

Value

guide-level stats for all experiments

Examples

 allGuideLevelStats = findGuideHitsAllScreens(myScreens, allDataCounts, allBinStats)

klarman-cell-observatory/MAUDE documentation built on Nov. 4, 2019, 3:53 p.m.