visuArc: Plots an arc diagram.

In komorowskilab/VisuNet: An interactive tool for network visualization of rule-based models in R

Description

An arc diagram is graphical representation of a selected part of the VisuNet network.

Usage

visuArch(net, df, icol, dec, mainTitle)

Arguments

net	An output network from the VisuNet.
df	A data frame containing network connection in columns.
discrete	Integer. Defines which column from df shall be taken.
dec	A character indciating decision class to be presented.
mainTitle	A character indciating title for the arch diagram.

Value

heatmap

An arc diagram presenting hub and all its connections dervied from rules.

Note

Function is supported with a package "arcdiagram".

Reference: Sanchez, Gaston. "Introduction to the R package arcdiagram." (2016)

Author(s)

Mateusz Garbulowski

See Also

https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.707.6275&rep=rep1&type=pdf

Examples

library(VisuNet)
library(arcdiagram)

visuArc(vNet, df, 1, "cancer", "sample arc diagram")

komorowskilab/VisuNet documentation built on Feb. 18, 2022, 8:16 p.m.