Man pages for kostasgian21/heteroplasmy
Calculation of the standard error of the variance for heteroplasmy data
| analyticVar | Analytic calculation of the standard error of the variance |
| analyticVarKimura | Kimura-based calculation of the standard error of the... |
| bootstrapVar | A boostap method to calculate the standard error of the... |
| estimate_parameters_ks | Max likelihood estimation of Kimura parameters that minimize... |
| estimate_parameters_ml | Max likelihood estimation for Kimura distribution parameters |
| heteroplasmyShift | Transformed heteroplasmy shift |
| hstats | Calculate various statistics for a heteroplasmy set h |
| invtransfun | The inverse function to transfun |
| jackVar | A jackknife method to compute the uncertainty of heteroplasmy... |
| joint_neg_log_lik | Joint negative log-likelihood function for several... |
| kimura_lrt | Likelihood ratio between two heteroplasmy samples |
| kimura_neg_loglik | Calculate negative log-likelihood for heteroplasmy... |
| ks_dist | Kolmogorov-Smirnov distance function |
| maxlik | Compute maximum likelihood parameters and confidence... |
| maxlikboot | Bootstrap estimates for parameters and confidence intervals... |
| mousedataBroz | 3 organellar heteroplasmy samples |
| mousedataFreyer | mouse PGCs heteroplasmy data |
| mousedataHB | HB oocyte heteroplasmy data |
| mousedataLE | LE oocyte heteroplasmy data |
| plotStdErrVar | An example plotting function |
| readHeteroplasmyData | A Function to read mouse heteroplasmy data (not finished!) |
| test_kimura_par | Generalised MC KS test for genetic drift |
| transfun | A Function to cast real numbers to '[0,1]' |
