API for koustav-pal/HiCBlocks
Framework for Storing and Accessing Hi-C Data Through HDF Files

Global functions
._Brick_Add_Ranges_ Source code
._Brick_Get_Something_ Source code
._Brick_Put_Something_ Source code
._Brick_WriteArray_ Source code
._Brick_WriteDataFrame_ Source code
._Brick_do_on_ComplexSelection_ Source code
._Check_numeric Source code
._ColIndexError_ Source code
._Compute_various_matrix_metrics Source code
._Create_file_connection Source code
._Do_on_vector_ComputeMinMax_ Source code
._Do_on_vector_ComputeRowSums_ Source code
._Do_on_vector_PercentGTZero_ Source code
._Do_on_vector_SparsityIndex_ Source code
._Do_rbind_on_matrices_of_different_sizes_ Source code
._Figure_out_genomic_scale Source code
._FindLineNumbers_ Source code
._GenerateRandomName_ Source code
._GetDimensions Source code
._Get_Brick_hashname Source code
._Parse_genomic_coordinates Source code
._ProcessMatrix_ Source code
._Process_matrix_by_distance Source code
._Process_mcool Source code
._format_by_charlen Source code
._get_first_nonzero_bin Source code
._get_sparsity_index Source code
._mcool_bintable_ranges Source code
._mcool_remap_chromosomes Source code
Backwards.Difference Source code
Brick_add_ranges Man page Source code
Brick_fetch_range_index Man page Source code
Brick_fetch_row_vector Man page Source code
Brick_get_bintable Man page Source code
Brick_get_chrominfo Man page Source code
Brick_get_matrix Man page Source code
Brick_get_matrix_mcols Man page Source code
Brick_get_matrix_within_coords Man page Source code
Brick_get_ranges Man page Source code
Brick_get_values_by_distance Man page Source code
Brick_get_vector_values Man page Source code
Brick_list_matrices Man page Source code
Brick_list_matrix_mcols Man page Source code
Brick_list_mcool_normalisations Man page Source code
Brick_list_mcool_resolutions Man page Source code
Brick_list_rangekeys Man page Source code
Brick_list_ranges_mcols Man page Source code
Brick_load_cis_matrix_till_distance Man page Source code
Brick_load_data_from_mcool Man page Source code
Brick_load_matrix Man page Source code
Brick_local_score_differentiator Man page Source code
Brick_make_ranges Man page Source code
Brick_matrix_dimensions Man page Source code
Brick_matrix_exists Man page Source code
Brick_matrix_filename Man page Source code
Brick_matrix_isdone Man page Source code
Brick_matrix_issparse Man page Source code
Brick_matrix_maxdist Man page Source code
Brick_matrix_minmax Man page Source code
Brick_mcool_normalisation_exists Man page Source code
Brick_rangekey_exists Man page Source code
Brick_return_region_position Man page Source code
Brick_vizart_plot_heatmap Man page Source code
CheckContinuousRanges Source code
CloseH5Con Source code
ComputeDirectionalityIndex Source code
ComputeOutlierOverIQRInsideWindow Source code
CreateAttributes Source code
CreateBrick Man page Source code
CreateBrick_from_mcool Man page Source code
CreateDataset Source code
CreateDomainlist Source code
CreateGroups Source code
Create_Path Source code
Format_boundaries_normal_heatmap Source code
Forwards.Difference Source code
GetAttributes Source code
Get_heatmap_theme Source code
Get_heatmap_titles Source code
Get_one_or_two_brick_regions Source code
HiCBricks Man page
MakeBoundaries Source code
Make_axis_labels Source code
Make_colours Source code
Read_bintable Source code
ReturnH5Attribute Source code
ReturnH5FileConnection Source code
ReturnH5Handler Source code
RotateHeatmap Source code
RotatePixels Source code
Split_genomic_coordinates Source code
Validate_table Source code
WriteAttributes Source code
add_to_data Source code
find_chr2_start_position Source code
get_chrom_info Source code
get_directionality_index_by_chunks Source code
get_legend_breaks Source code
humanize_size Source code
insert_data_and_computemetrics_both_matrices Source code
make_axis_coord_breaks Source code
make_boundaries_for_heatmap Source code
make_boundaries_for_rotated_heatmap Source code
make_colour_breaks Source code
make_mcool_iterations Source code
mcool_list_resolutions Source code
populate_matrix_with_values Source code
prepare_empty_metrics_list Source code
rescale_values_for_colours Source code
koustav-pal/HiCBlocks documentation built on May 28, 2019, 11:33 a.m.