Files in koustav-pal/HiCBlocks
Framework for Storing and Accessing Hi-C Data Through HDF Files
.Rbuildignore
.Rhistory
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/BrickContainer_functions.R
R/Brick_functions.R
R/Configuration_functions.R
R/LSD_functions.R
R/S4_functions.R
R/backend_functions.R
R/backend_utilities.R
R/bintable_functions.R
R/cooler_loader_v2.R
R/export_functions.R
R/hdf_functions.R
R/parallel_utilities.R
R/ranges_utilities.R
R/table_loader_v2.R
R/viz_art_backend.R
R/viz_art_functions.R
README.md
inst/CITATION
inst/extdata/Bintable_100kb.bins
inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr2L.txt.gz
inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr2R.txt.gz
inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr3L.txt.gz
inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr3R.txt.gz
inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chrX.txt.gz
man/BrickContainer_change_experiment_name.Rd
man/BrickContainer_change_output_directory.Rd
man/BrickContainer_get_path_to_file.Rd
man/BrickContainer_list_chromosomes.Rd
man/BrickContainer_list_experiment_name.Rd
man/BrickContainer_list_files.Rd
man/BrickContainer_list_output_directory.Rd
man/BrickContainer_list_resolutions.Rd
man/BrickContainer_unlink_resolution.Rd
man/Brick_add_ranges.Rd
man/Brick_call_compartments.Rd
man/Brick_export_to_sparse.Rd
man/Brick_fetch_range_index.Rd
man/Brick_fetch_row_vector.Rd
man/Brick_get_bintable.Rd
man/Brick_get_chrominfo.Rd
man/Brick_get_entire_matrix.Rd
man/Brick_get_matrix.Rd
man/Brick_get_matrix_mcols.Rd
man/Brick_get_matrix_within_coords.Rd
man/Brick_get_ranges.Rd
man/Brick_get_values_by_distance.Rd
man/Brick_get_vector_values.Rd
man/Brick_list_matrices.Rd
man/Brick_list_matrix_mcols.Rd
man/Brick_list_mcool_normalisations.Rd
man/Brick_list_mcool_resolutions.Rd
man/Brick_list_rangekeys.Rd
man/Brick_list_ranges_mcols.Rd
man/Brick_load_cis_matrix_till_distance.Rd
man/Brick_load_data_from_mcool.Rd
man/Brick_load_data_from_sparse.Rd
man/Brick_load_matrix.Rd
man/Brick_local_score_differentiator.Rd
man/Brick_make_ranges.Rd
man/Brick_matrix_dimensions.Rd
man/Brick_matrix_exists.Rd
man/Brick_matrix_filename.Rd
man/Brick_matrix_isdone.Rd
man/Brick_matrix_issparse.Rd
man/Brick_matrix_maxdist.Rd
man/Brick_matrix_minmax.Rd
man/Brick_mcool_normalisation_exists.Rd
man/Brick_rangekey_exists.Rd
man/Brick_return_region_position.Rd
man/Brick_vizart_plot_heatmap.Rd
man/Create_many_Bricks.Rd
man/Create_many_Bricks_from_mcool.Rd
man/HiCBricks.rd
man/load_BrickContainer.Rd
vignettes/IntroductionToHiCBricks.rmd
vignettes/custom.css
