hotspot_annotate_maf: Annotate somatic hotspot mutations
In kpjonsson/annotate-maf: Functional Annotation of Variants in a MAF File
View source: R/hotspot-annotate-maf.R
hotspot_annotate_maf R Documentation
Annotate somatic hotspot mutations
Description
Adds hotspot annotation to VEP-annotated MAF. Sources of default hotspots below.
Usage
hotspot_annotate_maf(maf, hotspot_tbl = NULL)
Arguments
maf
Input MAF.
hotspot_tbl
Custom table of hotspots.
Value
Annotated MAF with columns snv_hotspot, threeD_hotspot, indel_hotspot_type and Hotspot indicating types of hotspots. Note that the Hotspot column does not includes 3D hotspots.
kpjonsson/annotate-maf documentation built on Nov. 25, 2024, 8:10 a.m.
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View source: R/hotspot-annotate-maf.R
| hotspot_annotate_maf | R Documentation |
Annotate somatic hotspot mutations
Description
Adds hotspot annotation to VEP-annotated MAF. Sources of default hotspots below.
Usage
hotspot_annotate_maf(maf, hotspot_tbl = NULL)
Arguments
maf |
Input MAF. |
hotspot_tbl |
Custom table of hotspots. |
Value
Annotated MAF with columns snv_hotspot, threeD_hotspot, indel_hotspot_type and Hotspot indicating types of hotspots. Note that the Hotspot column does not includes 3D hotspots.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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