clean_deseq_res: Annotate arrange Deseq2 results

In kra277/rnaseqviz: A set functions that help in organizing, and visualizing RNA seq results.

Description

Function for adding q-values (FDR), annotate, arrange, and clean the deseq2 results.

Steps involved:

1. Deseq2 results were converted into a data frame.

2. Row names were converted to the column (ENTREZID).

3. Q values (FDR) were calculated using the P-values and 'qvalue' package.

4. ENTREZID were Annotated to get the SYMBOL and GENENAME.

5. Annotations were merged with results.

6. The columns were rearranged and the results were arranged based on P values.

Usage

clean_deseq_res(deseq_res)

Arguments

deseq_res

a Large Deseq Results

Value

clean_res_df: Deseq2 results which is DEG arranged ascendingly based on their P values

Examples

clean_res <- clean_deseq_res(deseq_res)

kra277/rnaseqviz documentation built on Feb. 6, 2022, 9:43 p.m.