plotstan: plotstan

In kralljr/stansa: Bayesian Source Apportionment Using RStan

Description

plotstan Create plots for assessing stan diagnostic

Usage

plotstan(
  typesim,
  stanres,
  dirname = NULL,
  filename = NULL,
  by = 5,
  prof = prof,
  meansd = meansd,
  pdf = F,
  hten = 250,
  wden = 20,
  htrh = 100,
  htbi = 10,
  wdbi = 20,
  typeplot = "none",
  plot = "bias"
)

Arguments

typesim	Which simulation to run. Currently, local1 - local4, ambient.
stanres	Output from runstan
dirname	Folder name where to save plots
filename	Base filename or typesim if NULL
by	Skips for traceplot, biasplot
prof	Profile data, defaults to prof.
meansd	Matrix with columns corresponding to source, type, mean, sd, defaults to meansd.
pdf	Whether to save pdfs of energy, rhat, bias
hten	Height in inches of energy pdf
wden	Width in inches of bias pdf
htrh	Height in inches of rhat pdf
htbi	Height in inches of bias pdf
typeplot	Whether to plot local or ambient
plot	Whether to plot only bias

kralljr/stansa documentation built on Dec. 21, 2021, 7:44 a.m.