Man pages for kridsadakorn/ipcaps.bioc
Iterative Pruning to Capture Population Structure

cal.eigen.fit(Internal function) Calculae a vector of EigenFit values,...
check.stopping(Internal function) Check whether the ipcaps process meets...
clustering(Internal function) Perform the clustering process of ipcaps
clustering.mode(Internal function) Select a clustering method to be used for...
diff.eigen.fit(Internal function) Calculate a vector of different values...
diff.xy(Internal function) Check the different value of X and Y,...
do.glm(Internal function) Perform regression models, internally...
export.groupsExport the ipcaps result to a text file
get.node.infoGet the information for specified node
ind.infoSample information of synthetic dataset containing the top 10...
ipcapsPerform unsupervised clustering to capture population...
IPCAPS.BIOC-packageIPCAPS.BIOC : Iterative Pruning to CApture Population...
labelSynthetic dataset containing population labels for the...
output.template(Internal object) The HTML output template for ipcaps
pasre.categorical.data(Internal function) Manipulate categorical input files
PCSynthetic dataset containing the top 10 principal components...
postprocess(Internal function) Perform the post-processing step of...
preprocess(Internal function) Perform the pre-processing step of ipcaps
process.each.node(Internal function) Perform the iterative process for each...
raw.dataSynthetic dataset containing single nucleotide polymorphisms...
replace.missing(Internal function) Replace missing values by specified...
save.eigenplots.htmlGenerate HTML file for EigenFit plots
save.htmlGenerate HTML file for clustering result in text mode
save.plotsWorkflow to generate HTML files for all kinds of plots
save.plots.cluster.htmlGenerate HTML file for scatter plots which all data points...
save.plots.label.htmlGenerate HTML file for scatter plots which data points are...
snp.infoMarker information of synthetic dataset containing single...
top.discriminatorDetecting top discriminators between two groups
kridsadakorn/ipcaps.bioc documentation built on Jan. 22, 2020, 11:18 p.m.