DOSeq: Modeling expression drop-out for analysis of scRNA-Seq data

In krishan57gupta/DOSeq: Modeling expression drop-out for analysis of scRNA-Seq data

Description

DOSeq - Modeling expression drop-out for analysis of scRNA-Seq data. DOSeq takes read count matrix and factor for drop-out ratio as input and return the read count matrix with dropout. Here input parameter factor indicates drop-out ratio in expression matrix.

Usage

DOSeq(countData, factor = 0.8)

Arguments

countData	read count matrix, with row names as genes name/ID and column names as sample id/name
factor	indicates dropout ratio

Value

Simulated read count with drop out

Examples

countData<-DOSeq::L_Tung_single$NA19098_NA19101_count
head(countData)
output<-DOSeq(countData=countData, factor=.8)
output

krishan57gupta/DOSeq documentation built on Feb. 17, 2021, 12:06 a.m.