survival_plot: Survival plots

In krishan57gupta/ORsurv: Survival of patients using ors on TCGA data

Description

requires projected matrix and survival info to plot survival and relevent plots

Usage

survival_plot(
  folder = "pdf",
  mat,
  mat_2,
  s,
  t = 3,
  name2 = "EXP_TCGA",
  name3 = "Survival_plot",
  month_limit,
  p_limit,
  selected_label
)

Arguments

folder	dir name to save pdf files
mat	prjected matrix getting after project of single cells and bulk TCGA data
mat_2	Labels for the two sub-populations
s	survival info
t	number of cluster
name2	specific for combine nameof single cell and bulk dataset names
name3	name for survival plots
month_limit	keeping survival info till specfic months, means number of months
p_limit	therosld to selecte clusters where pair-wise p val is less
selected_label	to pass already known cluster names out of all clusters

Value

surv_med would return median of each surv curve

krishan57gupta/ORsurv documentation built on Dec. 29, 2019, 4:56 p.m.