initiateAnalysis: Computes differential analysis for a given gene

Description Usage Arguments Value

View source: R/ROSeq.R

Description

Takes in the row index which corresponds to a gene and evaluates for differential expression across two cell types.

Usage

1
initiateAnalysis(gene, scdata, scgroups, classOne, classTwo)

Arguments

gene

The row index of the normalised and filtered, read count matrix

scdata

The normalised and filtered, read count matrix

scgroups

The location of the two sub-populations

classOne

The location of the first sub-population, for example, sample names as given as columns names

classTwo

The location of thesecond sub-population, for example, sample names as given as columns names

Value

combinedResults A vector containing 12 values (gr1: a, g1: b, gr1: A, gr1: number of bins, gr1: R2, gr2: a, gr2: b, gr2: A, gr2: number of bins, gr2: R2, T, p)


krishan57gupta/ROSeq documentation built on March 3, 2021, 11:12 a.m.