chlamydiae: Chlamydiae Sub-Taxa of Global Patterns Data

In krisrs1128/structSSI: Multiple Testing for Hypotheses with Hierarchical or Group Structure

Description

A phyloseq class object containing data on 16s rRNA diversity within the Chlamydiae bacteria taxon, originally appearing in PNAS.

Usage

data(chlamydiae)

Format

The format is: phyloseq-class experiment-level object.

References

McMurdie P.J., Holmes S. (2013). phyloseq: A Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence Data. PLoS ONE 8(4): e61217. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0061217.

Caporaso, J. G., et al. (2011). Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. PNAS, 108, 4516-4522. PMCID: PMC3063599

This can be viewed/downloaded at: http://www.pnas.org/content/108/suppl.1/4516.short

Sankaran, K and Holmes, S. structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data. Journal of Statistical Software, 59(13), 1-21. 2014. http://jstatsoft.org/v59/i13/

Examples

data(chlamydiae)

krisrs1128/structSSI documentation built on July 20, 2020, 9:42 a.m.