Files in kristianHoden/smartPARE
An R package for efficient identification of true mRNA cleavage sites
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/cleavageModelAndPrediction.R
R/makeWindowPictureFuncs.R
R/utils-pipe.R
README.md
inst/example/evaluate_smart/PGSC0003DMG400002426_987_R1.jpg
inst/example/evaluate_smart/PGSC0003DMG400002426_987_R2.jpg
inst/example/evaluate_smart/PGSC0003DMG400002426_988_R1.jpg
inst/example/evaluate_smart/PGSC0003DMG400002426_988_R2.jpg
inst/example/evaluate_smart/PGSC0003DMG400002799_611_R1.jpg
inst/example/evaluate_smart/PGSC0003DMG400002799_611_R2.jpg
inst/example/evaluate_smart/PGSC0003DMG400002820_551_R1.jpg
inst/example/evaluate_smart/PGSC0003DMG400002820_551_R2.jpg
inst/example/evaluate_smart/PGSC0003DMT400006358_1072_R2.jpg
inst/example/evaluate_smart/PGSC0003DMT400006361_1363_R2.jpg
inst/example/train/bad/EPrPINT00000002392_3432_R2.jpg
inst/example/train/bad/PGSC0003DMG400019913_589_R2.jpg
inst/example/train/bad/PGSC0003DMG401015682_2966_R2.jpg
inst/example/train/bad/PGSC0003DMT400007326_964_R1.jpg
inst/example/train/bad/PGSC0003DMT400007328_964_R1.jpg
inst/example/train/bad/PGSC0003DMT400007331_964_R1.jpg
inst/example/train/bad/PGSC0003DMT400007420_1990_R2.jpg
inst/example/train/bad/PGSC0003DMT400015900_686_R1.jpg
inst/example/train/bad/PGSC0003DMT400015900_686_R2.jpg
inst/example/train/bad/PGSC0003DMT400016487_1501_R2.jpg
inst/example/train/goodDown/EPrPINT00000001334_101_R1.jpg
inst/example/train/goodDown/EPrPINT00000001334_101_R2.jpg
inst/example/train/goodDown/EPrPINT00000002392_2972_R2.jpg
inst/example/train/goodDown/EPrPINT00000005574_573_R1.jpg
inst/example/train/goodDown/EPrPINT00000005574_573_R2.jpg
inst/example/train/goodDown/EPrPINT00000006251_580_R1.jpg
inst/example/train/goodDown/EPrPINT00000006251_580_R2.jpg
inst/example/train/goodDown/PGSC0003DMT400006064_996_R2.jpg
inst/example/train/goodDown/PGSC0003DMT400006357_1218_R1.jpg
inst/example/train/goodDown/PGSC0003DMT400006357_1218_R2.jpg
inst/example/train/goodUp/EPrPINT00000000324_573_R1.jpg
inst/example/train/goodUp/EPrPINT00000000324_573_R2.jpg
inst/example/train/goodUp/EPrPINT00000000409_573_R1.jpg
inst/example/train/goodUp/EPrPINT00000000409_573_R2.jpg
inst/example/train/goodUp/EPrPINT00000000452_573_R1.jpg
inst/example/train/goodUp/EPrPINT00000000452_573_R2.jpg
inst/example/train/goodUp/EPrPINT00000000517_573_R1.jpg
inst/example/train/goodUp/EPrPINT00000000517_573_R2.jpg
inst/example/train/goodUp/EPrPINT00000000538_574_R1.jpg
inst/example/train/goodUp/EPrPINT00000000538_574_R2.jpg
inst/example/trueCleavagesDf.csv
inst/model/CNNmodel.h5
man/extendGffTrans.Rd
man/kerasCreateDataset_2d.Rd
man/kerasCreateModelCNN_2d.Rd
man/makeGFF.Rd
man/phaseTankClustInGene.Rd
man/pipe.Rd
man/readGFF.Rd
man/runCLR.Rd
man/smartPARE_ListTrue.Rd
man/smartPARE_examineCleavages.Rd
man/smartPARE_parse.Rd
man/smartPARE_train.Rd
man/tuneCLR.Rd
smartPARE.Rproj
vignettes/.gitignore
vignettes/images/cleavage.jpg
vignettes/smartPARE-vignette.Rmd
vignettes/smartPARE-vignette.pdf
