Man pages for kristianHoden/smartPARE
An R package for efficient identification of true mRNA cleavage sites
| extendGffTrans | An example how to adopt the gff file to be used with... |
| kerasCreateDataset_2d | Function to import data to train the model |
| kerasCreateModelCNN_2d | Function used to create a 2d CNN model |
| makeGFF | Constructs a gff object |
| phaseTankClustInGene | Constructs the cleavage windows images |
| pipe | Pipe operator |
| readGFF | Read a gff object int R |
| runCLR | Optimizes the cyclical learning rate (CLR) based... |
| smartPARE_examineCleavages | Uses the trained model to assess if the images are true or... |
| smartPARE_ListTrue | Constructs a list of the true cleavages |
| smartPARE_parse | Parses the smartPARE output file into a dataset |
| smartPARE_train | Train the smartPARE CNN model |
| tuneCLR | Tuning the cyclical learning rate (CLR) |
