| arrange_ggplot2 | arrange multiple ggplots into one window |
| assignSeason | Assign Season based on Date |
| calculateClimateVariables | Calculate climate variables from weather data |
| calculateDateLags | Calculate lag dates: Previous_Survey_Date,... |
| calculateDegreeDays | Calculate Growing Degree Days |
| calculateFruitLags | Calculate fruit production variables at the previous time... |
| calculateInsectLags | Calculate insect presence at previous time step |
| calculateInsectLags2 | Calculate insect presence at time lag 2 |
| calculateInsectLags3 | Calculate insect presence at time lag 3 |
| calculateLagGroupedDF | Calculate lags on a grouped dataframe |
| calculateSizeLags | Calculate size variables at the previous time step |
| change_weather_names_function1 | Abbreviate weather variable names |
| change_weather_names_function2 | Abbreviate weather variable names to two characters |
| change_weather_names_function3 | Abbreviate weather variable names |
| Confirmed_Dead_Missing_Function | Confirm a Plant as Dead or Missing |
| Convert_Magic_Function | Convert the format of multiple columns |
| createFecundityYear | Create Create a Fecundity Year Variable |
| CreateKML_Function | Create a KML from a dataframe |
| Dead_Missing_Function | Function to determine if plant was ever observed dead or... |
| fecundity_rescale_function | Fecundity Rescale Function |
| filterClimateDataByQuality | Filter data by quality |
| fixErroneousTemps | Fix Erroneous Temperature Data |
| formatasFactors | Format as Factors |
| formatClimateDataYearDayofYear | Create Year and Day of Year Variables for Climate Data |
| formatconvertClimateData | Format and convert weather data |
| Format_Date_Function | Format dates |
| formatWeatherStationInfo | Format Weather Station Info |
| getClimateDataByLocationDate | Choose closest weather variable measurement for each... |
| KEStheme | Publication-ready ggplot2 Theme |
| Maximum | Return the maximum value of a vector, after removing NAs. |
| Maximum2 | Return the maximum value of a vector, after removing NAs. If... |
| Mean | Return the mean of a vector with up to two decimal places,... |
| mergeClimateFiles | Merge Weather Data Files and Format Column Names |
| Minimum | Return the minimum value of a vector, after removing NAs. |
| multiplot | Multiple plot function |
| mysum | Return NA for vector of NAs |
| mysum1 | Return NA for sums below 1 |
| mysum2 | Return 1 for sums greater than 0. |
| mysum3 | Return 1 for sums greater than 0, as well as for when vector... |
| NA_Function | Replace values with NA. |
| NA_is_Zero_Function | Change NA values to 0. |
| No_Function | Change "No" values to 0. |
| numbers2words | Numbers to words |
| Percentage | Return the percentage of a vector with up to one decimal... |
| popCV | Population Coefficient of Variation |
| PopVariance | Return the population variance of a vector, after removing... |
| process_FWtemp_PCA_data | Process Fall/Winter PCA Temperature data before merging with... |
| process_SStemp_PCA_data | Process Spring/Summer PCA Temperature data before merging... |
| process_temp_PCA_data | Process PCA Temperature data before merging with survey data. |
| Quality_Flag_Function | Filter Data by Quality Flag |
| Replace_0_w_No_Function | Replace 0 with "No". |
| Replace_1_w_Yes_Function | Replace 1 with "Yes". |
| Replace_Blank_w_Okay_Function | Replace blank values (quality is okay) with "Okay" |
| Replace_NA_w_Blank_Function | Replace NA with "". |
| Replace_NA_w_Period_Function | Replace NA with a ".". |
| rescale_function | Rescale Function |
| RGR_function | Calculate Relative Growth Rate |
| round_df | Round Function |
| safe.ifelse | Ifelse function that retains the original class of a variable |
| sampleCV | Sample Coefficient of Variation |
| saveConfirmedDeadMissing | Save File with Confirmed Dead and Missing Plants |
| seasons | Datasets of Start Dates for the Astronomical Seasons for the... |
| stricta_rescale_function | Rescale Function |
| substrRight | Saves the last n characters in a string |
| Sum | Return the sum of a vector, after removing NAs. |
| survival_rescale_function | survival rescale function |
| Transform | Calculate log and sqrt transformations |
| Unique | Return unique values of a vector after removal of NA |
| Variance | Return the sample variance of a vector, after removing NAs,... |
| vp.layout | Layout |
| Yes_Function | Standardize "Yes" values. |
| Yes_No_from_1_0_Function | Rename Convert 1/0 to Yes/No |
| Zero_is_NA_Function | Replace 0 with NA. |
