Man pages for ksmiff33/FluxSynthU
Suite of functions to analyze eddy covariance data
| fAddSiteMeta2Plot | Add site metadata to ggplot |
| fCharacter2Numeric | Convert character to numeric |
| fCheckFLXCols | Check whether column exists and export numeric vector |
| fCheckforQCFlags | Assign NA to bad flags |
| fCheckInteger | Check whether vector is an integer |
| fCritDates_QC | Quality check critical dates (SOS/EOS and SOW/EOW) from... |
| fDatenum | Calculate serial date |
| fExtract_SOSEOS_bySite | Estimate critical dates (SOS/EOS) from GPPsat time series. |
| fGetSiteInfo | Get metadata for selected site |
| fGPPandNEELightRespCoeff | Estimate light response coefficients |
| fHHTimestampforREddyProc | Match half-hourly flux data to a 'perfect' timestamp (no... |
| fHRTimestampforREddyProc | Match hourly flux data to a 'perfect' timestamp (no gaps) |
| fLogic2Numeric | Convert logical to numeric |
| fLookUp_variable_info | Lookup info for abbreviated FLUXNET variables |
| fPaginateGPPsatFacets | Plot faceted time series of GPPsat (with SOS/EOS) |
| fParseAmeriFlux | Prepare AmeriFlux data for REddyProc |
| fParseFLX2015 | Prepare FLUXNET2015 data for REddyProc |
| fParseNEON | Prepare NEON data for REddyProc |
| fPlotCritDate_Zscores | Plot Z-score distribution for SOS/EOS |
| fPlotCumuGPPbyYear | Plot time series of cumulative GPP/NEE |
| fPlotDailyMeans_forYear | Plot 365-day time series of GPPsat (with SOS/EOS) for a... |
| fPlot_FullTimeSeries_16panel_InitialQC | 16-panel composite plot for initial data QC (continuous time... |
| fPlotGPPsat_forYear | Plot 365-day time series of GPPsat (with SOS/EOS) for a... |
| fPlotGPPsat_plus_VariablesOfInterest | Plot 365-day time series of GPPsat (with SOS/EOS) as a single... |
| fPlot_GroupedLine_Single | Grouped line chart for continuous data time series |
| fPlot_InterannualTimeSeries_16panel_InitialQC | 16-panel composite plot for initial data QC (interannual time... |
| fPlot_Line_Single | Simple line chart for continuous data time series |
| fPlotMultiyearGPPsat | Plot multiyear daily time series of GPPsat (with SOS/EOS) |
| fPOSIX_to_fracyr_null | Convert POSIX dates to null fractional year |
| fracyr_to_DoYBreaks | Return a vector of null fractional years and their... |
| fRawDataProc_UserInputs | Initial user inputs and site selection for FluxSynthU data... |
| FS_fAppendREddyProcOutputs | Append annual REddyProc output files |
| FS_fBuildCompleteOutput | Build complete dataset from: (1) stacked REddyProc 'night'... |
| FS_fCalculateGPPandNEESatParameters | Calculate light-saturated GPP across moving window. |
| FS_fExtractAllCriticalDates | Analyze critical dates (SOS/EOS and SOW/EOW) from GPPsat and... |
| FS_fExtractWinterFluxes | Subset winter fluxes. |
| FS_fProcessingThruREddyProc | Perform gap-filling and flux partitioning using REddyProc... |
| FS_fRawDataProcessing | Process raw flux data (FLUXNET2015, AmeriFlux) |
| fSiteSelect | User site selection for FluxSynthU data processing |
| fTimestampQC | Find duplicate or missing (half-)hours in a timestamped... |
| print.gg_silent | Suppress ggplot2 messages |
| se | Standard error |
| site.meta | Site metadata for FluxSynthU. |
| theme_time | Custom theme for time series plots |
