plot_normalization: Mofidy DEP function to fit the format of Processed MaxQuant...

In ksong4/NetPhorce: Phosphoproteomics Network Analysis (NetPhorce)

Mofidy DEP function to fit the format of Processed MaxQuant Data

Description

The original functions from DEP pacakge can be found at: https://bioconductor.org/packages/release/bioc/html/DEP.html The only modification made is replace "condition" with "experiement" to match the NetPhorce definition of each of these two terms. normalize_vsn and theme_DEP1 also listed here as necessary functions for plot_normalization.

Usage

plot_normalization(se, se_norm, filterCondition = NULL)

Arguments

se	(Required). SummarizedExperiment object from the NetPhorce Object, log2-transformed raw count.
se_norm	(Required). SummarizedExperiment object from the NetPhorce Object. normalized log2-transformed raw count.
filterCondition	(Required). Experimental condition.

Value

plot object

Examples

NULL

ksong4/NetPhorce documentation built on March 24, 2023, 12:51 p.m.