asSummarizedExperiment | R Documentation |
SummarizedExperiment
Transforms an SPATA2
object to an object of class
SummarizedExperiment
. See details for more information.
asSummarizedExperiment(object, ...)
object |
An object of class |
... |
The features to be renamed specified according to the following syntax: 'new_feature_name' = 'old_feature_name'. This applies to coordinates, too. E.g. ... ~ 'image_col' = 'x', 'image_row' = 'y' renames the coordinate variables to 'image_col' and 'image_row'. |
Output object contains the count matrix in slot @assays and feature data.frame combined with barcode-spot coordinates in slot @colData.
Slot @metadata is a list that contains the image object in slot $image.
An object of class SummarizedExperiment
.
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