R/data.R

#' Collection of gene information
#'
#' Collection of gene information stored in tidy data fashion.
#' Information has been retrieved from the gene data base of the
#' \emph{National Library of Medicine}. Lastly updated on 27.10.2022.
#'
#' @source \url{https://www.ncbi.nlm.nih.gov/gene/?term=}
#'
#' \describe{
#'   \item{id}{Integer. Gene ID in the data base. E.g. gene GFAP has ID 2670.
#'    Combining them with the url \emph{https://www.ncbi.nlm.nih.gov/gene/`id`}
#'    results in the url of the webpage from which the from which the information
#'    has been retrieved. E.g. \url{https://www.ncbi.nlm.nih.gov/gene/2760}}
#'   \item{symbol}{Character. HGNC symbol of the gene. (Common gene abbreviation.)}
#'   \item{full_name}{Character. Full gene name.}
#'   \item{synonyms}{Character. Synonyms with which to refer to the gene. Separated by \emph{';'}}
#'   \item{summary}{Character. Human readable summary text of the gene. If `NA`, no summary
#'   has been found on the webpage.}
#'   \item{type}{Character. Describes the general function of the gene. E.g. protein coding, pseudo,
#'   scRNA, snoRNA, snRNA, tRNA, etc.}
#'   \item{organism}{Character. The organism in which the gene appears. Currently only Homo sapiens.}
#' }
#'
#' @docType data
#' @usage data(gene_info_df)
#'
"gene_info_df"
kueckelj/confuns documentation built on June 28, 2024, 9:19 a.m.