In kumeS/rMiW: rMiW - R package for providing the analysis workflow for microscopy-based images

BiocStyle::markdown()

Last modified: r file.info("rMiW_00_installation.Rmd")$mtime
Compiled: r Sys.time()

Currently, r Rpackage("rMiW") is a R package distributed in kumeS's GitHub site.

Getting started

1. Start R.app

2. Enter the following commands in the R console .

#Check for the installation (30 June 2021)

#Install
install.packages( "devtools" , repos="http://cran.r-project.org")
devtools::install_github( "kumeS/rMiW", force = TRUE )

#Load
library(rMiW)

#if you want to remove the package
#remove.packages("rMiW", lib=.libPaths())

In addition, you also need to install an ExperimentHub package from Bioconductor.

#Check for the installation (30 June 2021)
#install.packages("BiocManager")

#Install
BiocManager::install("ExperimentHub", force = TRUE)

#Load
library(ExperimentHub)

Optional proxy setting

Run the following commands in the R console.

#Proxy URL
proxy_url = "http://XXXX"

#Proxy setting
Sys.setenv("http_proxy" = proxy_url)
Sys.setenv("https_proxy" = proxy_url)
Sys.setenv("ftp_proxy" = proxy_url)

Session information {.unnumbered}

sessionInfo()

kumeS/rMiW documentation built on Dec. 21, 2021, 8:43 a.m.