Man pages for kwanjeeraw/grinn
graph database and R package for omics data integration
| combineNetwork | Combine two networks |
| convertToGrinnID | Convert other database IDs to Neo4j internal IDs and grinn... |
| curlRequestCypher | Execute Cypher query |
| curlRequestUrlToDF | Execute query from URI |
| curlRequestUrlToList | Execute query from URI |
| fetchCorrGrinnNetwork | Compute a weighted correlation network and expand the network... |
| fetchCorrNetwork | Compute a weighted correlation network |
| fetchDiffCorrGrinnNetwork | Compute a differential correlation network and expand the... |
| fetchDiffCorrNetwork | Compute a differential correlation network |
| fetchGrinnCorrNetwork | Combine a grinn network queried from Grinn internal database... |
| fetchGrinnDiffCorrNetwork | Combine a grinn network queried from grinn internal database... |
| fetchGrinnModuNetwork | Combine a grinn network queried from Grinn internal database... |
| fetchGrinnNetwork | Compute an integrated network using information from Grinn... |
| fetchGrinnPtCorrNetwork | Combine a grinn network queried from Grinn internal database... |
| fetchModuGrinnNetwork | Compute a network module correlated to a phenotypic feature... |
| fetchNode | Query for an entity or list of entities from grinn internal... |
| fetchNodeRelation | 'fetchNodeRelation' format get node relationships |
| fetchPtCorrGrinnNetwork | Compute a partial correlation network and expand the network... |
| fetchPtCorrNetwork | Compute partial correlation network |
| fetchRelation | 'fetchRelation' get path information |
| fetchWGCNAModule | Compute a network module correlated to a phenotypic feature |
| formatNetworkOutput | 'formatNetworkOutput' format resulting network |
| formatNodeOutput | 'formatNodeOutput' format resulting node |
| formatWGCNAModule | 'formatWGCNAModule' format resulting WGCNA module |
| getCorrAdjacency | compute correlation coefficients, pvalues and directions |
| getGrinnDb | Get Grinn database location |
| grinnShiny | Start GUI |
| setGrinnDb | Set Grinn database location |
