ccphate: Consensus Clustering with PHATE Geometry

In kyoustat/T4cluster: Tools for Cluster Analysis

Description

Consensus Clustering with PHATE Geometry

Usage

ccphate(data, k = 2, ...)

Arguments

data	an (n\times p) matrix of row-stacked observations.
k	the number of clusters (default: 2).
...	extra parameters including nnbd size of nearest neighborhood (default: 5). alpha decay parameter for Gaussian kernel exponent (default: 2). ratio percentage of samples to be used for each resampling run with the minimum is set as 0.25 (default: 0.9). niter number of resampling runs where the minimum is set 50 (default: 100).

kyoustat/T4cluster documentation built on Sept. 27, 2021, 11:10 a.m.