README.md

Hobotnica

Description

Hobotnica is a package that contains implementation of Hobotnica algorithm accompanied with several helper functions. The algorithm measures how well the dataset was divided onto subgroups (given the matrix of distances between samples,or distance matrix, and a vector of labels characterizing the belonging of each sample in dataseet to one single group, or annotation) by a single real-valued coefficient which is close to null when the annotation is random and close to one when annotation is correct.

Installation

The current recommended way is cloning this repo and executing: R CMD INSTALL --no-multiarch --with-keep.source . in it.

Data

All data and scripts related to application note in F1000Research are located in data branch



lab-medvedeva/Hobotnica-main documentation built on Dec. 21, 2021, 8:48 a.m.