submit: Submit a workflow for execution

In labbcb/CromwellClient: R package for consuming Cromwell API

Description

Submits a workflow to Cromwell Server.

Usage

submit(x, workflow, inputs, options = NULL, labels = NULL, version = "v1")

Arguments

x	Cromwell API endpoint.
workflow	The workflow source file to submit for execution.
inputs	JSON or YAML file containing the inputs as an object.
options	JSON file containing configuration options for the execution of this workflow.
labels	JSON file containing a set of collection of key/value pairs for labels to apply to this workflow.
version	Cromwell API Version.

Value

WorkflowIdAndStatus object containing status and id.

Examples

## Not run: 
host <- "http://localhost:8000"
workflow <- system.file("extdata/workflow.wdl", package = "CromwellClient")
inputs <- system.file("extdata/inputs.json", package = "CromwellClient")
submit(host, workflow, inputs)

## End(Not run)

labbcb/CromwellClient documentation built on Aug. 16, 2020, 9:11 p.m.