app: Open web application

In labbcb/GA4GHshiny: Shiny application for interacting with GA4GH-based data servers

Description

Web application for interacting with GA4GH API data servers.

Usage

app(host, orgDb = NA_character_, txDb = NA_character_,
  serverName = "GA4GHshiny")

Arguments

host	Character vector of an URL of GA4GH API data server endpoint.
orgDb	character vector of an org.Db package.
txDb	character vector of a TxDb package.
serverName	character vector of the server name. Default: GA4GHshiny.

Details

This application is dependent of which data the server provides trough GA4GH API. If some of tables or graphic charts not appear, the server connected may not provide the necessary data. For example, INFO data.

Value

Shiny application object.

Examples

if (interactive()) {
  library(org.Hs.eg.db)
  library(TxDb.Hsapiens.UCSC.hg19.knownGene)
  app("http://1kgenomes.ga4gh.org/", orgDb = "org.Hs.eg.db",
    txDb = "TxDb.Hsapiens.UCSC.hg19.knownGene")
}

labbcb/GA4GHshiny documentation built on May 20, 2019, 7:32 p.m.