app: Open web application

Description Usage Arguments Details Value Examples

Description

Web application for interacting with GA4GH API data servers.

Usage

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app(host, orgDb = NA_character_, txDb = NA_character_,
  serverName = "GA4GHshiny")

Arguments

host

Character vector of an URL of GA4GH API data server endpoint.

orgDb

character vector of an org.Db package.

txDb

character vector of a TxDb package.

serverName

character vector of the server name. Default: GA4GHshiny.

Details

This application is dependent of which data the server provides trough GA4GH API. If some of tables or graphic charts not appear, the server connected may not provide the necessary data. For example, INFO data.

Value

Shiny application object.

Examples

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if (interactive()) {
  library(org.Hs.eg.db)
  library(TxDb.Hsapiens.UCSC.hg19.knownGene)
  app("http://1kgenomes.ga4gh.org/", orgDb = "org.Hs.eg.db",
    txDb = "TxDb.Hsapiens.UCSC.hg19.knownGene")
}

labbcb/GA4GHshiny documentation built on May 20, 2019, 7:32 p.m.