clue_parse_result: Parse result folder

In labsyspharm/cluequery: Query the Clue Database of Perturbations Using R

Parse result folder

Description

Clue calculates different scores. Connectopedia gives an overview of their interpretation.

Usage

clue_parse_result(
  path,
  score_level = c("cell", "summary"),
  score_type = c("ns", "tau"),
  result_type = c("pert", "pcl")
)

Arguments

path	Path to Clue result gz file or extracted folder.
score_level	Return result on cell level (cell) or summarized (summary)
score_type	Return either normalized scores (ns) or CMap connectivity scores (tau). See details.
result_type	Return either perturbagen level information (pert) or aggregated perturbagen class level information (pcl).

Value

A tibble in tidy format, with the score for a single pertubation/gene set combination per row.

labsyspharm/cluequery documentation built on May 23, 2022, 6:25 a.m.