langmead-lab/snapcount: R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts

snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).

Getting started

Package details

Bioconductor views Coverage DataImport GeneExpression RNASeq Sequencing Software
Maintainer
LicenseMIT + file LICENSE
Version1.7.2
URL https://github.com/langmead-lab/snapcount
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("langmead-lab/snapcount")
langmead-lab/snapcount documentation built on May 1, 2022, 4:27 a.m.