Man pages for langmead-lab/snapcount
R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
| Compilation | Enum for Snaptron compilations |
| Coordinates | Enum for Snaptron Coordinate modifiers |
| from_url | Constructs a 'QueryBuilder' object from the given url |
| get_column_filters | Get or set sample-related contraints for query |
| get_compilation | Get or set query compilation |
| get_coordinate_modifier | Get or set coordinate modifiers for the query. |
| get_regions | Get or set query regions |
| get_row_filters | Get or set range-related contraints for query |
| get_sids | Get or set query sample ids |
| junction_inclusion_ratio | Relative measure of splice variant usage similar to PSI that... |
| junction_intersection | Get the intersection of junctions from 2 or more compilations... |
| junction_union | Get the union of junctions from 2 or more compilations which... |
| percent_spliced_in | Relative measure of splice variant usage, limited currently... |
| QueryBuilder | Construct a QueryBuilder object given a compilation and one... |
| query_jx | Query Junctions/Genes/Exons |
| shared_sample_counts | Shared Sample Count (SSC): counts total number of samples in... |
| snapcount-package | snapcount: an R package for interfacing with Snaptron |
| tissue_specificity | Tissue Specificity (TS): produces a list of samples with... |
| uri_of_last_successful_request | Return the URI of the last successful request to Snaptron |
