external_tests/README.md
In langmead-lab/snapr: R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
This will serve for now for smoke testing the output of snapcount against Snaptron directly.
It takes ~1m to run (on Stingray at least):
cd external_tests && /bin/bash -x check.sh
Then check the *.diff files for any that are not 0-sized.
The R script requires the SummarizedExperiment package to be installed (via BioConductor) for its rowRanges function.
langmead-lab/snapr documentation built on May 4, 2022, 7:41 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
This will serve for now for smoke testing the output of snapcount against Snaptron directly.
It takes ~1m to run (on Stingray at least):
cd external_tests && /bin/bash -x check.sh
Then check the *.diff files for any that are not 0-sized.
The R script requires the SummarizedExperiment package to be installed (via BioConductor) for its rowRanges function.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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