R package that makes linux environment modules available from R.
library(RLinuxModules) moduleInit( modulesHome = "yourpathToModulesEnvironment") module("load samtools") # loads samtools into the environment system("samtools") # samtools should now be available (if you have that module)
The Modules Environment does not support R scripting but does support Python. This package works by using the python support and translating the python commands returned from modulecmd python into R commands. It has only been tested for version 3.2.10
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