In laurabiggins/fastqR: Fastq file utilities

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

#devtools::load_all()
#library(fastqR)

Import fastq file

#fq_data <- read_fastq(system.file("good.fq", package = "fastqR"))
#fq_data

Add a column of GC content to the tibble

#fq_data <- dplyr::mutate(fq_data, GC_content = gc_content(seq))
#fq_data

laurabiggins/fastqR documentation built on Jan. 17, 2021, 1:14 a.m.