README.md
In laurabiggins/spex: spex data exploration
spex
The goal of spex is to provide an online tool for simple exploration of
biological datasets.
It is currently running
here on
the Babraham shiny server with an example dataset.
The initial page currently looks like this:
The tabs allow the user to explore a dataset, metadata information and
an example plot are shown below.
Preparing data
Main data file
A data file where each row contains a different genes (or other
markers), and each column contains a different sample e.g.
Metadata file
sample names in the first column that must match the column names in the
main dataset, then conditions in subsequent columns e.g.
| sample_name | class | time_series |
|--------------|-------|--------------|
| DAO06 | DA | 1440 |
| DAO09 | DA | 1440 |
| OEA098 | OEA | 240 |
| OEA068 | OEA | 960 |
| OEA101 | OEA | 960 |
Keep the name of the first column as “sample_name” - it’s simpler for
processing.
Installation
This is currently under initial development and has not been released.
laurabiggins/spex documentation built on Dec. 27, 2021, 8:14 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
spex
The goal of spex is to provide an online tool for simple exploration of biological datasets.
It is currently running here on the Babraham shiny server with an example dataset.
The initial page currently looks like this:
The tabs allow the user to explore a dataset, metadata information and
an example plot are shown below.
Preparing data
Main data file
A data file where each row contains a different genes (or other markers), and each column contains a different sample e.g.
Metadata file
sample names in the first column that must match the column names in the main dataset, then conditions in subsequent columns e.g.
| sample_name | class | time_series | |--------------|-------|--------------| | DAO06 | DA | 1440 | | DAO09 | DA | 1440 | | OEA098 | OEA | 240 | | OEA068 | OEA | 960 | | OEA101 | OEA | 960 |
Keep the name of the first column as “sample_name” - it’s simpler for processing.
Installation
This is currently under initial development and has not been released.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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