Man pages for laurenhsu1/corral
Correspondence Analysis for Single Cell Data
| add_embeddings2scelist | Add embeddings to list of SCEs |
| all_are | all_are |
| biplot_corral | Generate biplot for corral object |
| compsvd | compsvd: Compute Singular Value Decomposition (SVD) |
| corral | corral: Correspondence analysis on a single matrix |
| corralm | Multi-table correspondence analysis (list of matrices) |
| corral_preproc | Preprocess a matrix for SVD to perform Correspondence... |
| earthmover_dist | Earthmover distance (and general Wasserstein distance) |
| get_pct_var_exp_svd | Compute percent of variance explained |
| get_weights | Get weights |
| list2mat | List to Matrix |
| na2zero | Set na to 0 |
| obs2probs | Observations -> discrete probabilities |
| pairwise_rv | Pairwise rv coefficient |
| plot_embedding | Plot selected PCs from an embedding |
| plot_embedding_sce | Plot selected PCs from an embedding saved in a... |
| rv | rv coefficient |
| scal_var | Generate a scaled variance plot for an integrative embedding |
| scal_var_mat | Generate a matrix of the scaled variance values |
| sce2matlist | SingleCellExperiment to list of matrices |
| trim_matdist | Trim extreme values in a pre-processed matrix |
| var_stabilize | Apply a variance stabilizing transformation |
