Var_coordinates-methods: Var_coordinates

In lauzingaretti/LinkHD: LinkHD: a versatile framework to explore and integrate heterogeneous data

Var_coordinates

Description

Accessor to the coordinates projections into the compromise configuration of the selected variables from VarSelection output.

Usage

## S4 method for signature 'VarSelection'
Var_coordinates(x)

Arguments

x	an object from VarSelection class.

Value

Var_Coordinates, Coordinates of variables into the common configuration, i.e. the compromise from LinkData function

Examples

{
data(Taraoceans)
pro.phylo <- Taraoceans$taxonomy[ ,'Phylum']
TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo),
as.data.frame(Taraoceans$pro.NOGs))
TaraOc_1<-scale(TaraOc[[1]])
Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]),
function(x){DataProcessing(x,Method='Compositional')})
colnames(Normalization[[1]])=pro.phylo
colnames(Normalization[[2]])=Taraoceans$GO
TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]])
names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs')
TaraOc<-lapply(TaraOc,as.data.frame)
Output<-LinkData(TaraOc,Scale =FALSE,
Distance = c('ScalarProduct','Euclidean','Euclidean'))
Selection<-VarSelection(Output,TaraOc,Crit='Rsquare',perc=0.95)
Var_coordinates(Selection)
}

lauzingaretti/LinkHD documentation built on March 7, 2023, 9:21 a.m.