Files in lawremi/HelloRanges
Introduce *Ranges to bedtools users
.gitignore
DESCRIPTION
NAMESPACE
R/a.R
R/closest.R
R/complement.R
R/coverage.R
R/flank.R
R/genomecov.R
R/getfasta.R
R/groupby.R
R/intersect.R
R/jaccard.R
R/makewindows.R
R/map.R
R/merge.R
R/multiinter.R
R/nuc.R
R/shift.R
R/slop.R
R/subtract.R
R/test_HelloRanges_package.R
R/unionbedg.R
R/utils.R
inst/NEWS
inst/unitTests/data/closest/a.bed
inst/unitTests/data/closest/b.bed
inst/unitTests/data/closest/close-a.bed
inst/unitTests/data/closest/close-b.bed
inst/unitTests/data/closest/d.bed
inst/unitTests/data/closest/d_id.bed
inst/unitTests/data/closest/d_iu.bed
inst/unitTests/data/closest/mdb1.bed
inst/unitTests/data/closest/mdb2.bed
inst/unitTests/data/closest/mdb3.bed
inst/unitTests/data/closest/mq1.bed
inst/unitTests/data/closest/strand-test-a.bed
inst/unitTests/data/closest/strand-test-b.bed
inst/unitTests/data/coverage/a.bed
inst/unitTests/data/coverage/b.bed
inst/unitTests/data/coverage/test.genome
inst/unitTests/data/flank/a.bed
inst/unitTests/data/flank/tiny.genome
inst/unitTests/data/genomecov/chip.sam
inst/unitTests/data/genomecov/pair-chip.sam
inst/unitTests/data/genomecov/sam-w-del.sam
inst/unitTests/data/genomecov/test.genome
inst/unitTests/data/genomecov/three_blocks.sam
inst/unitTests/data/genomecov/y.bam
inst/unitTests/data/genomecov/y.bed
inst/unitTests/data/getfasta/blocks.bed
inst/unitTests/data/getfasta/t.fa
inst/unitTests/data/groupby/a_vcfSVtest.vcf
inst/unitTests/data/groupby/values3.header.bed
inst/unitTests/data/intersect/a.bed
inst/unitTests/data/intersect/b.bed
inst/unitTests/data/intersect/c.bed
inst/unitTests/data/intersect/d.bed
inst/unitTests/data/intersect/one_block.sam
inst/unitTests/data/intersect/three_blocks.sam
inst/unitTests/data/intersect/three_blocks_match.bed
inst/unitTests/data/intersect/three_blocks_match_1bp.bed
inst/unitTests/data/intersect/three_blocks_nomatch.bed
inst/unitTests/data/intersect/two_blocks.sam
inst/unitTests/data/intersect/x.bed
inst/unitTests/data/intersect/y.bed
inst/unitTests/data/jaccard/a.bam
inst/unitTests/data/jaccard/a.bed
inst/unitTests/data/jaccard/aMixedStrands.bed
inst/unitTests/data/jaccard/bMixedStrands.bed
inst/unitTests/data/jaccard/e.bed
inst/unitTests/data/jaccard/three_blocks_match.bam
inst/unitTests/data/jaccard/three_blocks_match.bed
inst/unitTests/data/makewindows/input.bed
inst/unitTests/data/makewindows/test.genome
inst/unitTests/data/map/ivls.bed
inst/unitTests/data/map/ivls2.bed
inst/unitTests/data/map/test.gff2
inst/unitTests/data/map/values.bed
inst/unitTests/data/map/values5.bed
inst/unitTests/data/merge/a.bed
inst/unitTests/data/merge/a.full.bed
inst/unitTests/data/merge/a.names.bed
inst/unitTests/data/merge/fullFields.bam
inst/unitTests/data/merge/testA.vcf
inst/unitTests/data/multiinter/a.bed
inst/unitTests/data/multiinter/b.bed
inst/unitTests/data/multiinter/c.bed
inst/unitTests/data/multiinter/test.genome
inst/unitTests/data/nuc/a.bed
inst/unitTests/data/nuc/test.fasta
inst/unitTests/data/shift/a.bed
inst/unitTests/data/shift/tiny.genome
inst/unitTests/data/slop/a.bed
inst/unitTests/data/slop/tiny.genome
inst/unitTests/data/subtract/a.bed
inst/unitTests/data/subtract/b.bed
inst/unitTests/data/subtract/c.bed
inst/unitTests/data/subtract/d.bed
inst/unitTests/data/unionbedg/a.bedGraph
inst/unitTests/data/unionbedg/b.bedGraph
inst/unitTests/data/unionbedg/c.bedGraph
inst/unitTests/data/unionbedg/test.genome
inst/unitTests/test_closest.R
inst/unitTests/test_coverage.R
inst/unitTests/test_flank.R
inst/unitTests/test_genomecov.R
inst/unitTests/test_getfasta.R
inst/unitTests/test_groupby.R
inst/unitTests/test_intersect.R
inst/unitTests/test_jaccard.R
inst/unitTests/test_makewindows.R
inst/unitTests/test_map.R
inst/unitTests/test_merge.R
inst/unitTests/test_multiinter.R
inst/unitTests/test_nuc.R
inst/unitTests/test_shift.R
inst/unitTests/test_slop.R
inst/unitTests/test_subtract.R
inst/unitTests/test_unionbedg.R
man/argparse.Rd
man/bedtools_closest.Rd
man/bedtools_complement.Rd
man/bedtools_coverage.Rd
man/bedtools_flank.Rd
man/bedtools_genomecov.Rd
man/bedtools_getfasta.Rd
man/bedtools_groupby.Rd
man/bedtools_intersect.Rd
man/bedtools_jaccard.Rd
man/bedtools_makewindows.Rd
man/bedtools_map.Rd
man/bedtools_merge.Rd
man/bedtools_multiinter.Rd
man/bedtools_nuc.Rd
man/bedtools_shift.Rd
man/bedtools_slop.Rd
man/bedtools_subtract.Rd
man/bedtools_unionbedg.Rd
man/distmode.Rd
man/pair.Rd
tests/HelloRanges_unit_tests.R
vignettes/auto/tutorial.el
vignettes/fig/complement.jpg
vignettes/fig/genomecov.jpg
vignettes/fig/intersect.jpg
vignettes/fig/merge.jpg
vignettes/tutorial.Rnw
vignettes/tutorial.bib
vignettes/tutorial.pdf
