exp-findPatterns-yw: Find Patterns

Description Usage Arguments Value Author(s)

Description

Finds patterns in data. Transitions within range of 'fraction' (centered on median) are considered flat (unchanging). Those below are falling and those above are rising.

Usage

1
exp_findPatterns(data, flat_fraction)

Arguments

data

A data frame of experimental data according to exploRase conventions.

flat_fraction

The fraction of transitions considered unchanged, centered on median.

Value

a data frame, with a row for each gene. The first column is the sum of x^i over all i from 1 to ncol(data)-1, where x is 1, 2, or 3, depending on whether the pattern is up, same, or down, respectively, for transition i. The second column contains the magnitude of the pattern.

Author(s)

Michael Lawrence <mflawren@fhcrc.org>


lawremi/exploRase documentation built on May 20, 2019, 2:40 p.m.