genevaR: Gene and Variants Plot
In lbmountain/genevaR: Visualize gene structure and mark variants
Description
Creates a plot that visualizes the selected gene and optionally marks variant positions.
Usage
1
Arguments
gff_file
Data frame including columns "seqid", "start", "end", "type" and "ID".
gene_name
ID of the gene of interest. Should be the same for the GFF and VCF input.
vcf_file
Data frame including columns "POS", "ANN....GENEID", "ANN....EFFECT" and optionally "Genotype". SnpSift-filtered VCF file.
plot_title
Customize plot title. Default is set to input of gene_name.
facets
Split plot into facets. Set to 'variants' or 'genotype' (this requires column "Genotype").
lbmountain/genevaR documentation built on Dec. 21, 2021, 9:44 a.m.
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Description
Creates a plot that visualizes the selected gene and optionally marks variant positions.
Usage
1 |
Arguments
gff_file |
Data frame including columns "seqid", "start", "end", "type" and "ID". |
gene_name |
ID of the gene of interest. Should be the same for the GFF and VCF input. |
vcf_file |
Data frame including columns "POS", "ANN....GENEID", "ANN....EFFECT" and optionally "Genotype". SnpSift-filtered VCF file. |
plot_title |
Customize plot title. Default is set to input of gene_name. |
facets |
Split plot into facets. Set to 'variants' or 'genotype' (this requires column "Genotype"). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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