formatBio: Format and rename colnames of original biomarker dataframe
In lc5415/HDATDS: Useful function for TDS project
Description
Usage
Arguments
Value
Examples
Description
The UK Biobank biomarker dataset column names are code names. This function recode those names to match those
of the look up table (bio.dict), so basically readable names.
Usage
1
formatBio(bio.original, measurement = "first")
Arguments
bio.original
Original biomarker data frame with the first column being ID and the other columns
being biomarker code and some 0 or 1 depending whether the biomarker measurement was the 'at-recruitment' measurement
(0) or the one at follow-up (1)
measurement
Measurement time to retrieve. Options: "first"(Default), "second" or "both". Note: if you
choose both the second biomarker colnames will be the biomarker names and ".1" appended to them, this will mess
up with the BHS calculator formatting and is not currently supported. Get in touch if you want to implement that.
Value
Biomarker data frame with human readable names
Examples
1
2
3
4
library(HDATDS)
data("bio.original_example") # this loads an object called bio.original
bio = formatBio(bio.original)
lc5415/HDATDS documentation built on April 27, 2020, 6:04 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
The UK Biobank biomarker dataset column names are code names. This function recode those names to match those of the look up table (bio.dict), so basically readable names.
Usage
1 | formatBio(bio.original, measurement = "first")
|
Arguments
bio.original |
Original biomarker data frame with the first column being ID and the other columns being biomarker code and some 0 or 1 depending whether the biomarker measurement was the 'at-recruitment' measurement (0) or the one at follow-up (1) |
measurement |
Measurement time to retrieve. Options: "first"(Default), "second" or "both". Note: if you choose both the second biomarker colnames will be the biomarker names and ".1" appended to them, this will mess up with the BHS calculator formatting and is not currently supported. Get in touch if you want to implement that. |
Value
Biomarker data frame with human readable names
Examples
1 2 3 4 | library(HDATDS)
data("bio.original_example") # this loads an object called bio.original
bio = formatBio(bio.original)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.