R/centromeres_doc.R

In lculibrk/Ploidetect-package: Interpretable detection of tumour purity, ploidy, copy number variation and loss of heterozygosity

#' hg19 centromere positions
#'
#' Chromosomal positions of centromeres in the hg19 assembly. 
#' Used in the Ploidetect package for filtering out centromere positions,
#' which tend to map inconsistently
#'
#' @docType data
#'
#' @usage data(centromeres)
#'
#' @format A data.frame
#'
#' @keywords datasets
#'
#' @references Haeussler et al. (2019) Nucleic acids res. 8;47(D1):D853-D858
#' (\href{https://www.ncbi.nlm.nih.gov/pubmed/30407534}{PubMed})
#'
#'
#' @examples
#' data(centromeres)